BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB027E07LP1|AL428738
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig840 1760 0.0
>3x_Contig840
Length = 3380
Score = 1760 bits (885), Expect = 0.0
Identities = 897/903 (99%)
Strand = Plus / Minus
Query: 1 cccggacgcattcttatggaaaatcttgttttcgaggatctttatagcagggaataattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1670 cccggacgcattcttatggaaaatcttgttttcgaggatctttatagcagggaataattg 1611
Query: 61 caatggtgtcgataggagaattgccagagcgtaaattagttgtactgcgtttgtgaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1610 caatggtgtcgataggagaattgccagagcgtaaattagttgtactgcgtttgtgaagat 1551
Query: 121 actgttcgaggggaaattcaacaagatgacagtttctactttggctccgaatgcagagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1550 actgttcgaggggaaattcaacaagatgacagtttctactttggctccgaatgcagagta 1491
Query: 181 acagatgagcccacaggagataaatattattgttacaacgaggatgacgtacatcaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 acagatgagcccacaggagataaatattattgttacaacgaggatgacgtacatcaatgc 1431
Query: 241 cggtttgaaatgtgcaggtttttccatagattcatggattgggatcaagagaccgatacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 cggtttgaaatgtgcaggtttttccatagattcatggattgggatcaagagaccgatacc 1371
Query: 301 ctcatatgtgaatatcgcagttccaataaataacgtccagtccgatttgttgaaagacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 ctcatatgtgaatatcgcagttccaataaataacgtccagtccgatttgttgaaagacac 1311
Query: 361 catggaatccgaagcgatgccatggttccaaatatagaaactggaataataatagacgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 catggaatccgaagcgatgccatggttccaaatatagaaactggaataataatagacgta 1251
Query: 421 tactagacccaagagaatgaaaagatctgctaccaaagcggtggcactgagtcttgcmat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1250 tactagacccaagagaatgaaaagatctgctaccaaagcggtggcactgagtcttgcaat 1191
Query: 481 gtttctagtcaatgatagcggcaaatagaatgctagttggatcataatccagaagattaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 gtttctagtcaatgatagcggcaaatagaatgctagttggatcataatccagaagattaa 1131
Query: 541 cgagtattcgagagamaagacatgtttgaagaatgcctgcsagtttgttgcagtgaacac 600
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1130 cgagtattcgagagaaaagacatgtttgaagaatgcctgcaagtttgttgcagtgaacac 1071
Query: 601 agtataagcmgcagccaatccgatttgcgagagttcaatcgatgaaaggacagtgaactt 660
||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1070 agtataagcagcagcaaatccgatttgcgagagtacaatcgatgaaaggacagtgaactt 1011
Query: 661 caatttgggtccgaataaacgtgaacccaattcaccgtatccatccactccaacagcagt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 caatttgggtccgaataaacgtgaacccaattcaccgtatccatccactccaacagcagt 951
Query: 721 cttcgtgtctatcaacaggatgaagcagtagaaagacaccgtggcgcagaacaaaagaca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 cttcgtgtctatcaacaggatgaagcagtagaaagacaccgtggcgcagaacaaaagaca 891
Query: 781 cagcgtactgaacaaccacccaccgttatggaaagctctaggtagaaaaagaaccccggt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 cagcgtactgaacaaccacccaccgttatggaaagctctaggtagaaaaagaaccccggt 831
Query: 841 acctacgaacgactttagaaggagaagtaccgccttcgtggtggacgtatttcttttctt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 acctacgaacgactttagaaggagaagtaccgccttcgtggtggacgtatttcttttctt 771
Query: 901 ctt 903
|||
Sbjct: 770 ctt 768
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5944
Number of Sequences: 1807
Number of extensions: 5944
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.9 bits)